Research workbench
Crystal structure of CYP105N1 from streptomyces coelicolor: a cytochrome P450 oxidase in the coelibactin siderophore biosynthetic pathway
Analyse Crystal structure of CYP105N1 from streptomyces coelicolor: a cytochrome P450… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FXB
- Type
- protein
- Length
- 760 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative cytochrome P450
- UniProt
- Q9EWP1
- Ligands
- HEM
- Pockets
- 20 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative cytochrome P450 | protein | 390 | 49% helix, 6% strand | Q9EWP1 |
| B | Putative cytochrome P450 | protein | 370 | 48% helix, 8% strand | Q9EWP1 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 955 | 0.83 | 0.84 | 108 | HEM |
| 2 | 883 | 0.79 | 0.82 | 68 | empty |
| 3 | 708 | 0.78 | 0.82 | 82 | HEM |
| 4 | 70 | 0.71 | 0.97 | 20 | empty |
| 5 | 268 | 0.70 | 0.85 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 1651 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 4FXB · Crystal structure of CYP105N1 from Streptomyces coelicolor: a cytochrome P450 oxidase in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9EWP1
- Elsewhere: RCSB PDB 4FXB · PDBe 4FXB · UniProt Q9EWP1
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