Research workbench
Recombinant prolidase from thermococcus sibiricus
Analyse Recombinant prolidase from thermococcus sibiricus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FKC
- Type
- protein
- Length
- 370 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xaa-pro aminopeptidase
- UniProt
- C6A2N7
- Ligands
- CD
- Pockets
- 3 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xaa-pro aminopeptidase | protein | 370 | 35% helix, 24% strand | C6A2N7 |
Ligands and binding sites
- CD · Cadmium ion · metal · 12 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.50 | 0.79 | 20 | empty |
| 2 | 130 | 0.45 | 0.77 | 19 | empty |
| 3 | 71 | 0.34 | 0.76 | 17 | empty |
Compared structures
- 4FKC · Recombinant prolidase from Thermococcus sibiricus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6A2N7
- Elsewhere: RCSB PDB 4FKC · PDBe 4FKC · UniProt C6A2N7
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