Research workbench
Legionella pneumophila lapg (egta-treated)
Analyse Legionella pneumophila lapg (egta-treated) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FGP
- Type
- protein
- Length
- 372 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic protein
- UniProt
- Q5ZXA4
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic protein | protein | 186 | 43% helix, 20% strand | Q5ZXA4 |
| B | Periplasmic protein | protein | 186 | 42% helix, 20% strand | Q5ZXA4 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 506 | 0.77 | 0.84 | 58 | empty |
| 2 | 132 | 0.49 | 0.79 | 26 | empty |
| 3 | 110 | 0.47 | 0.79 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 613 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4FGP · Legionella pneumophila LapG (EGTA-treated) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZXA4
- Elsewhere: RCSB PDB 4FGP · PDBe 4FGP · UniProt Q5ZXA4
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