Research workbench
Crystal structure of levan fructotransferase D54N mutant from arthrobacter ureafaciens in complex with levanbiose
Analyse Crystal structure of levan fructotransferase D54N mutant from arthrobacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FFI
- Type
- protein
- Length
- 1,917 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Levan fructotransferase
- EC
- 4.2.2.16
- UniProt
- Q9KJD0
- Ligands
- FRU
- Pockets
- 20 · best druggability 0.60
Structure
x-ray diffraction · 3 distinct chains · 8% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Levan fructotransferase (EC 4.2.2.16) | protein | 480 | 7% helix, 49% strand | Q9KJD0 |
| C | Levan fructotransferase (EC 4.2.2.16) | protein | 479 | 8% helix, 49% strand | Q9KJD0 |
| D | Levan fructotransferase (EC 4.2.2.16) | protein | 478 | 8% helix, 50% strand | Q9KJD0 |
Ligands and binding sites
- FRU · beta-D-fructofuranose · sugar · 21 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 267 | 0.60 | 0.79 | 33 | FRU |
| 2 | 276 | 0.60 | 0.79 | 28 | empty |
| 3 | 290 | 0.59 | 0.78 | 28 | empty |
| 4 | 248 | 0.59 | 0.79 | 36 | FRU |
| 5 | 285 | 0.59 | 0.78 | 26 | empty |
Interfaces
4 interfaces between chains.
- A–B · 423 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 313 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 277 Ų buried · 3 hydrogen bonds · protein-protein
- C–D · 43 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4FFI · Crystal Structure of Levan Fructotransferase D54N mutant from Arthrobacter ureafaciens in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KJD0
- Elsewhere: RCSB PDB 4FFI · PDBe 4FFI · UniProt Q9KJD0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.