Research workbench
Crystal structure suse from bacteroides thetaiotaomicron with maltoheptaose
Analyse Crystal structure suse from bacteroides thetaiotaomicron with maltoheptaose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FCH
- Type
- protein
- Length
- 426 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein suse
- UniProt
- G8JZT0
- Ligands
- GLC, SO4
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Outer membrane protein suse | protein | 213 | 8% helix, 44% strand | G8JZT0 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 7 copies · chains A
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 379 | 0.60 | 0.76 | 37 | EDO |
| 2 | 117 | 0.37 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 491 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4FCH · Crystal Structure SusE from Bacteroides thetaiotaomicron with maltoheptaose · the same entry in another collection · chain A against A, TM-score 1.00
- G8JZT0 · AlphaFold monomer V2.0 prediction for outer membrane protein suse (G8JZT0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G8JZT0
- Elsewhere: RCSB PDB 4FCH · PDBe 4FCH · UniProt G8JZT0
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