Research workbench
Crystal structure of the myxococcus xanthus hemagglutinin in complex with A3,A6-mannopentaose
Analyse Crystal structure of the myxococcus xanthus hemagglutinin in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4FBV
- Type
- protein
- Length
- 266 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myxobacterial hemagglutinin
- UniProt
- P07386
- Ligands
- MAN, BMA
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myxobacterial hemagglutinin | protein | 266 | 0% helix, 55% strand | P07386 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 159 | 0.48 | 0.77 | 26 | empty |
| 2 | 60 | 0.28 | 0.74 | 18 | empty |
Compared structures
- 4FBV · Crystal structure of the Myxococcus Xanthus hemagglutinin in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P07386 · AlphaFold monomer V2.0 prediction for myxobacterial hemagglutinin (P07386) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07386
- Elsewhere: RCSB PDB 4FBV · PDBe 4FBV · UniProt P07386
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