Research workbench
The structure of an aromatic compound transport protein from rhodopseudomonas palustris in complex with P-coumarate
Analyse The structure of an aromatic compound transport protein from rhodopseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4F8J
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative branched-chain amino acid transport system substrate-binding protein
- UniProt
- Q6N8W4
- Ligands
- HC4, SO4, CL
- Pockets
- 3 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative branched-chain amino acid transport system substrate-binding protein | protein | 359 | 46% helix, 20% strand | Q6N8W4 |
Ligands and binding sites
- HC4 · 4'-hydroxycinnamic acid · ligand · chains A
- SO4 · Sulfate ion · ion · 4 copies · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.40 | 0.79 | 20 | GOL |
| 2 | 87 | 0.31 | 0.73 | 20 | GOL |
| 3 | 68 | 0.31 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 4F8J · The structure of an aromatic compound transport protein from Rhodopseudomonas palustris… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N8W4
- Elsewhere: RCSB PDB 4F8J · PDBe 4F8J · UniProt Q6N8W4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.