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Crystal structure of a glutamine-binding periplasmic protein from burkholderia pseudomallei in complex with glutamine
Analyse Crystal structure of a glutamine-binding periplasmic protein from burkholderia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4F3P
- Type
- protein
- Length
- 443 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamine-binding periplasmic protein
- UniProt
- Q3JIF9
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamine-binding periplasmic protein | protein | 223 | 36% helix, 33% strand | Q3JIF9 |
| B | Glutamine-binding periplasmic protein | protein | 220 | 36% helix, 35% strand | Q3JIF9 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.37 | 0.75 | 17 | empty |
| 2 | 99 | 0.36 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 444 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4F3P · Crystal structure of a Glutamine-binding periplasmic protein from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3JIF9
- Elsewhere: RCSB PDB 4F3P · PDBe 4F3P · UniProt Q3JIF9
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