Research workbench
Structural analysis of monomeric hemichrome and dimeric cyanomet hemoglobins from caudina arenicola
Analyse Structural analysis of monomeric hemichrome and dimeric cyanomet hemoglobins… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1HLB
- Type
- protein
- Length
- 157 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemoglobin (deoxy)
- UniProt
- P80018
- Ligands
- ACE, HEM
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemoglobin (deoxy) | protein | 157 | 67% helix, 0% strand | P80018 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 406 | 0.76 | 0.85 | 43 | HEM |
| 2 | 54 | 0.30 | 0.76 | 11 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1HLB · Structural analysis of monomeric hemichrome and dimeric cyanomet hemoglobins from Caudina… · the same entry in another collection · chain A against A, TM-score 1.00
- P80018 · AlphaFold monomer V2.0 prediction for globin C, coelomic (P80018) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80018
- Elsewhere: RCSB PDB 1HLB · PDBe 1HLB · UniProt P80018
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