Research workbench
1.55 ångström crystal structure of the four helical bundle membrane localization domain (4HBM) of the vibrio vulnificus martx effector domain DUF5
Analyse 1.55 ångström crystal structure of the four helical bundle membrane… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ERR
- Type
- protein
- Length
- 165 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autotransporter adhesin
- UniProt
- Q8D6P9
- Ligands
- BR, CL
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 83% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autotransporter adhesin | protein | 82 | 84% helix, 0% strand | Q8D6P9 |
| B | Autotransporter adhesin | protein | 83 | 82% helix, 0% strand | Q8D6P9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 146 | 0.45 | 0.76 | 27 | BR, CL |
Interfaces
1 interface between chains.
- A–B · 1647 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4ERR · 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8D6P9
- Elsewhere: RCSB PDB 4ERR · PDBe 4ERR · UniProt Q8D6P9
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