Research workbench
Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid
Analyse Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ERJ
- Type
- RNA
- Length
- 161 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysine riboswitch RNA
- Ligands
- ACA
- Pockets
- 7 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine riboswitch RNA | rna | 161 | — | — |
Ligands and binding sites
- ACA · 6-aminohexanoic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 685 | 0.70 | 0.79 | 38 | empty |
| 2 | 734 | 0.68 | 0.77 | 44 | empty |
| 3 | 207 | 0.45 | 0.74 | 17 | empty |
| 4 | 140 | 0.37 | 0.73 | 16 | empty |
| 5 | 54 | 0.36 | 0.80 | 13 | empty |
Compared structures
- 4ERJ · Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4ERJ · PDBe 4ERJ
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