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The crystal structure of pesticin from yersinia pestis
Analyse The crystal structure of pesticin from yersinia pestis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EPF
- Type
- protein
- Length
- 668 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pesticin
- UniProt
- Q57159
- Pockets
- 6 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pesticin | protein | 333 | 42% helix, 18% strand | Q57159 |
| B | Pesticin | protein | 335 | 41% helix, 18% strand | Q57159 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 219 | 0.46 | 0.73 | 26 | empty |
| 2 | 108 | 0.41 | 0.76 | 20 | empty |
| 3 | 152 | 0.40 | 0.73 | 21 | empty |
| 4 | 72 | 0.38 | 0.77 | 13 | empty |
| 5 | 78 | 0.35 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 812 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 4EPF · The crystal structure of pesticin from Yersinia pestis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57159
- Elsewhere: RCSB PDB 4EPF · PDBe 4EPF · UniProt Q57159
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