Research workbench
Crystal structure of fluoride riboswitch, bound to iridium
Analyse Crystal structure of fluoride riboswitch, bound to iridium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ENB
- Type
- RNA
- Length
- 52 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluoride riboswitch
- Ligands
- MG, IRI, K, F
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluoride riboswitch | rna | 52 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 7 copies · chains A
- IRI · Iridium hexammine ion · metal · 4 copies · chains A
- K · Potassium ion · metal · chains A
- F · Fluoride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 298 | 0.57 | 0.78 | 20 | IRI, F, MG |
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 4ENB · Crystal structure of fluoride riboswitch, bound to Iridium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4ENB · PDBe 4ENB
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