Research workbench
Structure of the catalytic chain of methanococcus jannaschii aspartate transcarbamoylase in a hexagonal crystal form
Analyse Structure of the catalytic chain of methanococcus jannaschii aspartate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EKN
- Type
- protein
- Length
- 304 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aspartate carbamoyltransferase
- EC
- 2.1.3.2
- UniProt
- Q58976
- Ligands
- K, SO4
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Aspartate carbamoyltransferase (EC 2.1.3.2) | protein | 304 | 46% helix, 14% strand | Q58976 |
Ligands and binding sites
- K · Potassium ion · metal · chains B
- SO4 · Sulfate ion · ion · 4 copies · chains B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.56 | 0.78 | 38 | SO4 |
| 2 | 67 | 0.36 | 0.77 | 14 | empty |
Compared structures
- 4EKN · Structure of the catalytic chain of Methanococcus jannaschii Aspartate Transcarbamoylase… · the same entry in another collection · chain B against B, TM-score 1.00
- Q58976 · AlphaFold monomer V2.0 prediction for aspartate carbamoyltransferase (Q58976) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58976
- Elsewhere: RCSB PDB 4EKN · PDBe 4EKN · UniProt Q58976
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.