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Crystal structure of major capsid protein S domain from rabbit hemorrhagic disease virus
Analyse Crystal structure of major capsid protein S domain from rabbit hemorrhagic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EJR
- Type
- protein
- Length
- 326 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major capsid protein VP60
- UniProt
- Q3HNQ1
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Major capsid protein VP60 | protein | 163 | 6% helix, 45% strand | Q3HNQ1 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.57 | 0.77 | 39 | empty |
| 2 | 145 | 0.50 | 0.79 | 32 | empty |
Interfaces
1 interface between chains.
- A–B · 543 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4EJR · Crystal structure of major capsid protein S domain from rabbit hemorrhagic disease virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3HNQ1
- Elsewhere: RCSB PDB 4EJR · PDBe 4EJR · UniProt Q3HNQ1
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