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Crystal structure of padr family transcriptional regulator from eggerthella lenta dsm 2243
Analyse Crystal structure of padr family transcriptional regulator from eggerthella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EJO
- Type
- protein
- Length
- 224 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional regulator, padr-like family
- UniProt
- C8WHB0
- Pockets
- 3 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains · 64% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional regulator, padr-like family | protein | 112 | 65% helix, 14% strand | C8WHB0 |
| B | Transcriptional regulator, padr-like family | protein | 112 | 63% helix, 13% strand | C8WHB0 |
Ligands and binding sites
- EOH · Ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.42 | 0.73 | 24 | empty |
| 2 | 57 | 0.33 | 0.77 | 10 | empty |
| 3 | 57 | 0.31 | 0.75 | 10 | EOH |
Interfaces
1 interface between chains.
- A–B · 121 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 4EJO · Crystal structure of padr family transcriptional regulator from Eggerthella lenta DSM 2243 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8WHB0
- Elsewhere: RCSB PDB 4EJO · PDBe 4EJO · UniProt C8WHB0
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