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Crystal structure of major capsid protein P domain from rabbit hemorrhagic disease virus

Analyse Crystal structure of major capsid protein P domain from rabbit hemorrhagic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4EGT
Type: protein
Length: 657 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major capsid protein VP60
UniProt: Q3HNQ1
Pockets: 7 · best druggability 0.61

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Major capsid protein VP60	protein	326	8% helix, 39% strand	Q3HNQ1
B	Major capsid protein VP60	protein	331	7% helix, 38% strand	Q3HNQ1

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	194	0.61	0.82	21	empty
2	309	0.60	0.78	41	empty
3	314	0.59	0.78	43	empty
4	55	0.43	0.83	19	empty
5	88	0.41	0.78	28	empty

Interfaces

1 interface between chains.

A–B · 1899 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

4EGT · Crystal structure of major capsid protein P domain from rabbit hemorrhagic disease virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3HNQ1
Elsewhere: RCSB PDB 4EGT · PDBe 4EGT · UniProt Q3HNQ1

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