Research workbench
Crystal structure of a pheromone COB1 PRECURSOR/LIPOPROTEIN, yaec family (EF2496) from enterococcus faecalis V583 at 1.90 a resolution
Analyse Crystal structure of a pheromone COB1 PRECURSOR/LIPOPROTEIN, yaec family… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EF1
- Type
- protein
- Length
- 490 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pheromone COB1/LIPOPROTEIN, yaec family
- UniProt
- Q831K8
- Ligands
- MSE
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pheromone COB1/LIPOPROTEIN, yaec family | protein | 245 | 42% helix, 26% strand | Q831K8 |
Ligands and binding sites
- MSE · Selenomethionine · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 510 | 0.63 | 0.76 | 59 | empty |
| 2 | 90 | 0.38 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 146 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 4EF1 · Crystal structure of a pheromone cOB1 precursor/lipoprotein, YaeC family (EF2496) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q831K8
- Elsewhere: RCSB PDB 4EF1 · PDBe 4EF1 · UniProt Q831K8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.