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Crystal structure of a leucine-rich repeat protein (BACEGG_03329) from bacteroides eggerthii dsm 20697 at 2.70 a resolution
Analyse Crystal structure of a leucine-rich repeat protein (BACEGG_03329) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ECO
- Type
- protein
- Length
- 1,232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- B7AM07
- Ligands
- NA
- Pockets
- 9 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 620 | 20% helix, 19% strand | B7AM07 |
| B | Uncharacterized protein | protein | 612 | 20% helix, 18% strand | B7AM07 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 669 | 0.71 | 0.79 | 78 | empty |
| 2 | 88 | 0.53 | 0.85 | 27 | empty |
| 3 | 113 | 0.52 | 0.82 | 28 | empty |
| 4 | 149 | 0.45 | 0.76 | 29 | empty |
| 5 | 160 | 0.44 | 0.75 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 327 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 28 modified (engineered).
Compared structures
- 4ECO · Crystal structure of a leucine-rich repeat protein (BACEGG_03329) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7AM07
- Elsewhere: RCSB PDB 4ECO · PDBe 4ECO · UniProt B7AM07
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