Research workbench
Crystal structure of 16S rRNA methyltransferase rsme from E.COLI
Analyse Crystal structure of 16S rRNA methyltransferase rsme from E.COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E8B
- Type
- protein
- Length
- 242 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal RNA small subunit methyltransferase E
- EC
- 2.1.1.193
- UniProt
- P0AGL7
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.193) | protein | 242 | 31% helix, 26% strand | P0AGL7 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 207 | 0.54 | 0.78 | 23 | empty |
| 2 | 62 | 0.30 | 0.74 | 12 | empty |
Compared structures
- 4E8B · Crystal structure of 16S rRNA Methyltransferase RsmE from E.coli · the same entry in another collection · chain A against A, TM-score 1.00
- P0AGL7 · AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase E… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGL7
- Elsewhere: RCSB PDB 4E8B · PDBe 4E8B · UniProt P0AGL7
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