Research workbench
Crystal structure of receiver domain of putative narl family response regulator SPR1814 from streptococcus pneumoniae in the presence of the phosphoryl analog beryllofluoride
Analyse Crystal structure of receiver domain of putative narl family response regulator… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E7P
- Type
- protein
- Length
- 262 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Response regulator
- UniProt
- Q8DNC2
- Ligands
- BEF, MG
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Response regulator | protein | 131 | 42% helix, 22% strand | Q8DNC2 |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.47 | 0.76 | 27 | empty |
| 2 | 130 | 0.44 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 379 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4E7P · Crystal structure of receiver domain of putative NarL family response regulator spr1814… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DNC2
- Elsewhere: RCSB PDB 4E7P · PDBe 4E7P · UniProt Q8DNC2
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