Research workbench
Crystal structure of a DUF4468 family protein (BACOVA_04320) from bacteroides ovatus atcc 8483 at 1.49 a resolution
Analyse Crystal structure of a DUF4468 family protein (BACOVA_04320) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E6F
- Type
- protein
- Length
- 344 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A7M2I6
- Ligands
- NO3
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 171 | 30% helix, 38% strand | A7M2I6 |
| B | Uncharacterized protein | protein | 173 | 32% helix, 37% strand | A7M2I6 |
Ligands and binding sites
- NO3 · Nitrate ion · ion · 7 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 662 | 0.63 | 0.74 | 53 | EDO |
| 2 | 108 | 0.40 | 0.76 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 547 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 4E6F · Crystal structure of a DUF4468 family protein (BACOVA_04320) from Bacteroides ovatus ATCC… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7M2I6
- Elsewhere: RCSB PDB 4E6F · PDBe 4E6F · UniProt A7M2I6
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