Research workbench
Crystal structure of a putative thua-like protein (PARMER_02418) from parabacteroides merdae atcc 43184 at 1.75 a resolution
Analyse Crystal structure of a putative thua-like protein (PARMER_02418) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E5V
- Type
- protein
- Length
- 559 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative thua-like protein
- UniProt
- A7AG74
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative thua-like protein | protein | 280 | 23% helix, 27% strand | A7AG74 |
| B | Putative thua-like protein | protein | 279 | 23% helix, 28% strand | A7AG74 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 16 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.78 | 0.99 | 23 | empty |
| 2 | 76 | 0.45 | 0.82 | 15 | empty |
| 3 | 61 | 0.42 | 0.82 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 958 Ų buried · 30 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 4E5V · Crystal structure of a Putative thua-like protein (PARMER_02418) from Parabacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7AG74
- Elsewhere: RCSB PDB 4E5V · PDBe 4E5V · UniProt A7AG74
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.