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Crystal structure of 19MER double-helical RNA containing CUG/CGG- repeats

Analyse Crystal structure of 19MER double-helical RNA containing CUG/CGG- repeats in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4E5C
Type: RNA
Length: 38 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-R(P*GP*GP*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*UP*GP*CP*UP*GP*C P*C)-3'
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-R(PGPGPCPGPGPCPGPGPCPGPGPCPUPGPCPUPGPC P*C)-3'	rna	19	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	106	0.31	0.72	12	empty

Interfaces

1 interface between chains.

A–B · 984 Å² buried · 82 hydrogen bonds · nucleic-nucleic

Compared structures

4E5C · Crystal Structure of 19mer double-helical RNA containing CUG/CGG-repeats · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4E5C · PDBe 4E5C

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