Research workbench
Crystal structure of GCC(LCG)CCGC duplex containing lna residue
Analyse Crystal structure of GCC(LCG)CCGC duplex containing lna residue in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E58
- Type
- RNA
- Length
- 23 nucleotides
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA duplex containing ccg repeats
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, D | RNA duplex containing ccg repeats | rna | 8 | — | — |
| E | RNA duplex containing ccg repeats | rna | 7 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- C–D · 290 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- E–D · 131 Ų buried · 9 hydrogen bonds · nucleic-nucleic
- C–E · 124 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 3 modified (nucleotide modification).
Compared structures
- 4E58 · Crystal structure of GCC(LCG)CCGC duplex containing LNA residue · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4E58 · PDBe 4E58
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