Research workbench
Periplasmic domain of the chimeric wzzb chain length regulator protein
Analyse Periplasmic domain of the chimeric wzzb chain length regulator protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E29
- Type
- protein
- Length
- 463 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chimeric wzzb chain length determinant protein
- UniProt
- P37792, Q04866
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 60% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chimeric wzzb chain length determinant protein | protein | 233 | 61% helix, 11% strand | P37792, Q04866 |
| B | Chimeric wzzb chain length determinant protein | protein | 230 | 60% helix, 10% strand | P37792, Q04866 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 745 | 0.73 | 0.79 | 88 | empty |
| 2 | 138 | 0.42 | 0.75 | 24 | empty |
| 3 | 120 | 0.37 | 0.73 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 2014 Ų buried · 33 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 4E29 · Periplasmic domain of the chimeric WzzB chain length regulator protein · the same entry in another collection · chain A against A, TM-score 1.00
- P37792 · AlphaFold monomer V2.0 prediction for chain length determinant protein (P37792) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q04866 · AlphaFold monomer V2.0 prediction for chain length determinant protein (Q04866) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37792
- Every structure of UniProt Q04866
- Elsewhere: RCSB PDB 4E29 · PDBe 4E29 · UniProt P37792 · UniProt Q04866
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.