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Structure of cytidine monophosphate kinase from yersinia pseudotuberculosis

Analyse Structure of cytidine monophosphate kinase from yersinia pseudotuberculosis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4E22
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytidylate kinase
EC: 2.7.4.25
UniProt: B1JRD8
Ligands: SO4
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytidylate kinase (EC 2.7.4.25)	protein	213	46% helix, 18% strand	B1JRD8

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	531	0.63	0.75	42	SO4

Compared structures

4E22 · Structure of cytidine monophosphate kinase from Yersinia pseudotuberculosis · the same entry in another collection · chain A against A, TM-score 1.00
B1JRD8 · AlphaFold monomer V2.0 prediction for cytidylate kinase (B1JRD8) · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B1JRD8
Elsewhere: RCSB PDB 4E22 · PDBe 4E22 · UniProt B1JRD8

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