Research workbench
Re-refinement of pdb entry 2EQA - SUA5 protein from sulfolobus tokodaii with bound threonylcarbamoyladenylate
Analyse Re-refinement of pdb entry 2EQA - SUA5 protein from sulfolobus tokodaii with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4E1B
- Type
- protein
- Length
- 330 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- YRDC/SUA5 family protein
- UniProt
- Q970S6
- Ligands
- TXA, MG
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | YRDC/SUA5 family protein | protein | 330 | 37% helix, 21% strand | Q970S6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 418 | 0.72 | 0.82 | 48 | MG, TXA |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 4E1B · Re-refinement of PDB entry 2EQA - SUA5 protein from Sulfolobus tokodaii with bound… · the same entry in another collection · chain A against A, TM-score 1.00
- Q970S6 · AlphaFold monomer V2.0 prediction for threonylcarbamoyl-AMP synthase (Q970S6) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q970S6
- Elsewhere: RCSB PDB 4E1B · PDBe 4E1B · UniProt Q970S6
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