Research workbench
Crystal structure of the terminase small subunit GP1 with R48A mutation of the bacterial virus SF6
Analyse Crystal structure of the terminase small subunit GP1 with R48A mutation of the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DZP
- Type
- protein
- Length
- 253 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene 1 protein
- UniProt
- Q716H4
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 64% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gene 1 protein | protein | 123 | 65% helix, 7% strand | Q716H4 |
| B | Gene 1 protein | protein | 130 | 62% helix, 7% strand | Q716H4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 204 | 0.54 | 0.78 | 24 | empty |
| 2 | 53 | 0.24 | 0.72 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1901 Ų buried · 34 hydrogen bonds · protein-protein
Compared structures
- 4DZP · Crystal structure of the terminase small subunit gp1 with R48A mutation of the bacterial… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q716H4
- Elsewhere: RCSB PDB 4DZP · PDBe 4DZP · UniProt Q716H4
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