Research workbench
Crystal structure of staphylococcal superantigen-like protein 4
Analyse Crystal structure of staphylococcal superantigen-like protein 4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DXF
- Type
- protein
- Length
- 384 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Staphylococcal enterotoxin-like toxin
- UniProt
- A6QE81
- Ligands
- CL
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Staphylococcal enterotoxin-like toxin | protein | 194 | 19% helix, 42% strand | A6QE81 |
| B | Staphylococcal enterotoxin-like toxin | protein | 190 | 17% helix, 43% strand | A6QE81 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 830 | 0.74 | 0.78 | 73 | GOL, CL |
Interfaces
1 interface between chains.
- A–B · 434 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4DXF · Crystal structure of Staphylococcal Superantigen-Like protein 4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6QE81
- Elsewhere: RCSB PDB 4DXF · PDBe 4DXF · UniProt A6QE81
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