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Crystal structure of trypanosome cruzi farnesyl diphosphate synthase in complex with [2-(N-HEPTYLAMINO)ETHANE-1,1-DIYL]BISPHOSPHONIC acid and MG2+
Analyse Crystal structure of trypanosome cruzi farnesyl diphosphate synthase in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DWG
- Type
- protein
- Length
- 361 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Farnesyl pyrophosphate synthase
- EC
- 2.5.1.10
- UniProt
- Q95WL3
- Ligands
- 0M8, MG, NA, SO4
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Farnesyl pyrophosphate synthase (EC 2.5.1.10) | protein | 361 | 75% helix, 2% strand | Q95WL3 |
Ligands and binding sites
- 0M8 · [2-(heptylamino)ethane-1,1-diyl]bis(phosphonic acid) · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 429 | 0.81 | 0.89 | 54 | MG, 0M8, SO4 |
| 2 | 76 | 0.33 | 0.74 | 18 | empty |
Compared structures
- 4DWG · Crystal structure of Trypanosome cruzi farnesyl diphosphate synthase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q95WL3
- Elsewhere: RCSB PDB 4DWG · PDBe 4DWG · UniProt Q95WL3
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