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Crystal structure of a putative zinc-dependent alcohol dehydrogenase protein from rhizobium etli cfn 42
Analyse Crystal structure of a putative zinc-dependent alcohol dehydrogenase protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DVJ
- Type
- protein
- Length
- 683 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative zinc-dependent alcohol dehydrogenase protein
- UniProt
- Q2JZD9
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative zinc-dependent alcohol dehydrogenase protein | protein | 341 | 32% helix, 24% strand | Q2JZD9 |
| B | Putative zinc-dependent alcohol dehydrogenase protein | protein | 342 | 31% helix, 25% strand | Q2JZD9 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 517 | 0.73 | 0.82 | 56 | empty |
| 2 | 520 | 0.72 | 0.81 | 58 | empty |
| 3 | 214 | 0.65 | 0.84 | 37 | empty |
| 4 | 96 | 0.38 | 0.76 | 20 | empty |
| 5 | 74 | 0.36 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1549 Ų buried · 22 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 4DVJ · Crystal structure of a putative zinc-dependent alcohol dehydrogenase protein from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2JZD9
- Elsewhere: RCSB PDB 4DVJ · PDBe 4DVJ · UniProt Q2JZD9
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