Research workbench
Crystal structure of the minor pseudopilin epsh from the type II secretion system of vibrio cholerae
Analyse Crystal structure of the minor pseudopilin epsh from the type II secretion… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DQ9
- Type
- protein
- Length
- 291 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General secretion pathway protein H
- UniProt
- P45774
- Ligands
- NA, CL
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | General secretion pathway protein H | protein | 149 | 19% helix, 32% strand | P45774 |
| B | General secretion pathway protein H | protein | 142 | 18% helix, 34% strand | P45774 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.36 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 612 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4DQ9 · Crystal structure of the minor pseudopilin EPSH from the type II secretion system of… · the same entry in another collection · chain A against A, TM-score 1.00
- P45774 · AlphaFold monomer V2.0 prediction for type II secretion system protein H (P45774) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45774
- Elsewhere: RCSB PDB 4DQ9 · PDBe 4DQ9 · UniProt P45774
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