Research workbench
Crystal structure of a conserved protein MM_1583 from methanosarcina mazei GO1
Analyse Crystal structure of a conserved protein MM_1583 from methanosarcina mazei GO1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DPO
- Type
- protein
- Length
- 203 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved protein
- UniProt
- Q8PWK2
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Conserved protein | protein | 102 | 42% helix, 36% strand | Q8PWK2 |
| B | Conserved protein | protein | 101 | 43% helix, 34% strand | Q8PWK2 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.60 | 0.87 | 20 | empty |
| 2 | 115 | 0.60 | 0.85 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 1243 Ų buried · 22 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 4DPO · Crystal structure of a conserved protein MM_1583 from Methanosarcina mazei Go1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PWK2
- Elsewhere: RCSB PDB 4DPO · PDBe 4DPO · UniProt Q8PWK2
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