Research workbench
Crystal structure of papaya mosaic virus capsid protein
Analyse Crystal structure of papaya mosaic virus capsid protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DOX
- Type
- protein
- Length
- 328 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein
- UniProt
- A2IAW7
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Coat protein | protein | 164 | 48% helix, 1% strand | A2IAW7 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.39 | 0.80 | 13 | empty |
| 2 | 57 | 0.36 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 137 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4DOX · Crystal Structure of Papaya mosaic virus capsid protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2IAW7
- Elsewhere: RCSB PDB 4DOX · PDBe 4DOX · UniProt A2IAW7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.