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Crystal structure of the pyrococcus furiosus ferredoxin D14C variant containing the heterometallic [AGFE3S4] cluster

Analyse Crystal structure of the pyrococcus furiosus ferredoxin D14C variant containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4DHV
Type: protein
Length: 132 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferredoxin
UniProt: P29603
Ligands: NCO, 0KA

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Ferredoxin	protein	66	27% helix, 27% strand	P29603

Ligands and binding sites

NCO · Cobalt hexammine(iii) · ligand · 4 copies · chains B, A
0KA · Silver/iron/sulfur cluster · ligand · 2 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

B–A · 472 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

4DHV · Crystal structure of the Pyrococcus furiosus ferredoxin D14C variant containing the… · the same entry in another collection · chain B against B, TM-score 1.00
P29603 · AlphaFold monomer V2.0 prediction for ferredoxin (P29603) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P29603
Elsewhere: RCSB PDB 4DHV · PDBe 4DHV · UniProt P29603

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