Research workbench
Crystal structure of a probable GTP-binding protein engb from burkholderia thailandensis
Analyse Crystal structure of a probable GTP-binding protein engb from burkholderia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DHE
- Type
- protein
- Length
- 399 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable GTP-binding protein engb
- UniProt
- Q2SU58
- Ligands
- CL
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable GTP-binding protein engb | protein | 208 | 40% helix, 22% strand | Q2SU58 |
| B | Probable GTP-binding protein engb | protein | 191 | 42% helix, 24% strand | Q2SU58 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 417 | 0.62 | 0.77 | 42 | empty |
| 2 | 105 | 0.56 | 0.84 | 19 | empty |
| 3 | 190 | 0.51 | 0.77 | 28 | empty |
| 4 | 133 | 0.50 | 0.80 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 394 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4DHE · Crystal structure of a probable GTP-binding protein engB from Burkholderia thailandensis · the same entry in another collection · chain A against A, TM-score 1.00
- Q2SU58 · AlphaFold monomer V2.0 prediction for probable GTP-binding protein engb (Q2SU58) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2SU58
- Elsewhere: RCSB PDB 4DHE · PDBe 4DHE · UniProt Q2SU58
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