Research workbench
Low resolution structure of drosophila translin
Analyse Low resolution structure of drosophila translin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DG7
- Type
- protein
- Length
- 1,713 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GM27569P
- UniProt
- Q7JVK6
- Pockets
- 20 · best druggability 0.70
Structure
x-ray diffraction · 6 distinct chains · 74% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | GM27569P | protein | 212 | 75% helix, 1% strand | Q7JVK6 |
| B | GM27569P | protein | 213 | 74% helix, 1% strand | Q7JVK6 |
| D, G | GM27569P | protein | 214 | 74% helix, 1% strand | Q7JVK6 |
| E | GM27569P | protein | 216 | 74% helix, 1% strand | Q7JVK6 |
| F | GM27569P | protein | 215 | 74% helix, 1% strand | Q7JVK6 |
| H | GM27569P | protein | 217 | 74% helix, 1% strand | Q7JVK6 |
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 694 | 0.70 | 0.77 | 67 | empty |
| 2 | 661 | 0.69 | 0.77 | 75 | empty |
| 3 | 604 | 0.69 | 0.78 | 67 | empty |
| 4 | 579 | 0.68 | 0.78 | 66 | empty |
| 5 | 550 | 0.68 | 0.78 | 44 | empty |
Interfaces
15 interfaces between chains.
- G–H · 1804 Ų buried · 21 hydrogen bonds · protein-protein
- E–F · 1532 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 1379 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 1323 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 827 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4DG7 · Low resolution structure of Drosophila Translin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7JVK6
- Elsewhere: RCSB PDB 4DG7 · PDBe 4DG7 · UniProt Q7JVK6
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