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Crystal structure of had family enzyme bt-2542 from bacteroides thetaiotaomicron (target efi-501088)

Analyse Crystal structure of had family enzyme bt-2542 from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4DCC
Type: protein
Length: 203 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative haloacid dehalogenase-like hydrolase
UniProt: Q8A4Q5
Ligands: UNL, NA, CL
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative haloacid dehalogenase-like hydrolase	protein	203	52% helix, 13% strand	Q8A4Q5

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
NA · Sodium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	304	0.61	0.78	32	CL, UNL

Compared structures

4DCC · Crystal structure of had family enzyme bt-2542 from bacteroides thetaiotaomicron (target… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A4Q5
Elsewhere: RCSB PDB 4DCC · PDBe 4DCC · UniProt Q8A4Q5

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