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Crystal structure of equine infectious anaemia virus matrix antigen (eiav ma)
Analyse Crystal structure of equine infectious anaemia virus matrix antigen (eiav ma) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1HEK
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag polyprotein, core protein P15
- UniProt
- P03351
- Pockets
- 4 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Gag polyprotein, core protein P15 | protein | 116 | 54% helix, 0% strand | P03351 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.48 | 0.78 | 23 | empty |
| 2 | 137 | 0.44 | 0.76 | 28 | empty |
| 3 | 54 | 0.35 | 0.78 | 13 | empty |
| 4 | 52 | 0.34 | 0.78 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 518 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 1HEK · Crystal structure of equine infectious anaemia virus matrix antigen (EIAV MA) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03351
- Elsewhere: RCSB PDB 1HEK · PDBe 1HEK · UniProt P03351
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