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Crystal structure of arabidopsis thaliana UVR8 (UV resistance locus 8)

Analyse Crystal structure of arabidopsis thaliana UVR8 (UV resistance locus 8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4D9S
Type: protein
Length: 763 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uvb-resistance protein UVR8
UniProt: Q9FN03
Pockets: 5 · best druggability 0.86

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uvb-resistance protein UVR8	protein	383	5% helix, 43% strand	Q9FN03
B	Uvb-resistance protein UVR8	protein	380	6% helix, 43% strand	Q9FN03

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	383	0.86	0.95	43	empty
2	466	0.76	0.85	49	empty
3	496	0.75	0.83	48	empty
4	399	0.62	0.78	33	empty
5	61	0.30	0.74	13	empty

Interfaces

1 interface between chains.

A–B · 1471 Å² buried · 37 hydrogen bonds · protein-protein

Compared structures

4D9S · Crystal structure of Arabidopsis thaliana UVR8 (UV Resistance locus 8) · the same entry in another collection · chain A against A, TM-score 1.00
Q9FN03 · AlphaFold monomer V2.0 prediction for ultraviolet-B receptor UVR8 (Q9FN03) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9FN03
Elsewhere: RCSB PDB 4D9S · PDBe 4D9S · UniProt Q9FN03

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