Research workbench
High resolution structure of monomeric S. progenies speb reveals role of glycine-rich active site loop
Analyse High resolution structure of monomeric S. progenies speb reveals role of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4D8B
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Streptopain
- EC
- 3.4.22.10
- UniProt
- E0PTS8
- Ligands
- NO3
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Streptopain (EC 3.4.22.10) | protein | 254 | 25% helix, 22% strand | E0PTS8 |
Ligands and binding sites
- NO3 · Nitrate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.29 | 0.76 | 22 | empty |
Compared structures
- 4D8B · High resolution structure of monomeric S. progenies SpeB reveals role of glycine-rich… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E0PTS8
- Elsewhere: RCSB PDB 4D8B · PDBe 4D8B · UniProt E0PTS8
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