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The structure of the catalytic domain of NCLPMO9C from the filamentous fungus neurospora crassa
Analyse The structure of the catalytic domain of NCLPMO9C from the filamentous fungus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4D7V
- Type
- protein
- Length
- 451 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase II
- UniProt
- Q7SHI8
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase II | protein | 227 | 8% helix, 36% strand | Q7SHI8 |
| B | Endoglucanase II | protein | 224 | 8% helix, 35% strand | Q7SHI8 |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains A, B
- ACT · Acetate ion · additive · 8 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.54 | 0.77 | 32 | empty |
| 2 | 51 | 0.33 | 0.78 | 15 | ACT |
| 3 | 70 | 0.32 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 289 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 4D7V · The structure of the catalytic domain of NcLPMO9C from the filamentous fungus Neurospora… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SHI8
- Elsewhere: RCSB PDB 4D7V · PDBe 4D7V · UniProt Q7SHI8
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