Research workbench
Crystal structure of a chimeric protein with the SEC7 domain of rickettsia prowazekii ralf and the capping domain of legionella pneumophila ralf
Analyse Crystal structure of a chimeric protein with the SEC7 domain of rickettsia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4D7R
- Type
- protein
- Length
- 355 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PROLINE/BETAINE transporter, ralf
- UniProt
- M9TGB4, Q8RT31
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PROLINE/BETAINE transporter, ralf | protein | 355 | 54% helix, 12% strand | M9TGB4, Q8RT31 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.68 | 0.80 | 47 | empty |
| 2 | 85 | 0.35 | 0.76 | 15 | empty |
| 3 | 83 | 0.34 | 0.75 | 14 | empty |
| 4 | 61 | 0.31 | 0.75 | 11 | empty |
Compared structures
- 4D7R · Crystal structure of a chimeric protein with the Sec7 domain of Rickettsia prowazekii… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M9TGB4
- Every structure of UniProt Q8RT31
- Elsewhere: RCSB PDB 4D7R · PDBe 4D7R · UniProt M9TGB4 · UniProt Q8RT31
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