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Crystal structure of KTI13/ATS1

Analyse Crystal structure of KTI13/ATS1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4D4Q
Type
protein
Length
648 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Protein ATS1
UniProt
P31386
Pockets
9 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 1% helix, 47% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProtein ATS1protein3291% helix, 48% strandP31386
BProtein ATS1protein3191% helix, 47% strandP31386

Pockets

9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15270.750.8346empty
25690.750.8249empty
31210.550.8329empty
42660.550.7623empty
5890.500.8321empty

Interfaces

1 interface between chains.

  • A–B · 580 Ų buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

  • 4D4Q · Crystal Structure of Kti13/AtS1 · the same entry in another collection · chain A against A, TM-score 1.00
  • P31386 · AlphaFold monomer V2.0 prediction for protein KTI13 (P31386) · a predicted model of the same protein · chain B against A, TM-score 0.98

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