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Crystal structure of computationally designed armadillo repeat proteins for modular peptide recognition.

Analyse Crystal structure of computationally designed armadillo repeat proteins for… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4D4E
Type: protein
Length: 476 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Armadillo repeat protein ARM00016
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Armadillo repeat protein ARM00016	protein	238	77% helix, 0% strand	—

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1176	0.71	0.75	88	GOL

Interfaces

1 interface between chains.

A–B · 757 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

4D4E · Crystal structure of computationally designed armadillo repeat proteins for modular… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4D4E · PDBe 4D4E

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