Research workbench
Solution structure of a pou-specific homeodomain: 3D-NMR studies of human B-cell transcription factor oct-2
Analyse Solution structure of a pou-specific homeodomain: 3D-NMR studies of human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1HDP
- Type
- protein
- Length
- 63 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oct-2 pou homeodomain
- UniProt
- P09086
- Pockets
- 1 · best druggability 0.38
Structure
solution nmr · 1 distinct chain · 52% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oct-2 pou homeodomain | protein | 63 | 52% helix, 0% strand | P09086 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.38 | 0.80 | 12 | empty |
Modifications
Observed in the structure: 2 isopeptide (isopeptide).
Compared structures
- 1HDP · Solution structure of a pou-specific homeodomain: 3D-NMR studies of human B-cell… · the same entry in another collection · chain A against A, TM-score 1.00
- P09086 · AlphaFold monomer V2.0 prediction for pou domain, class 2, transcription factor 2 (P09086) · a predicted model of the same protein · chain A against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09086
- Elsewhere: RCSB PDB 1HDP · PDBe 1HDP · UniProt P09086
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