Research workbench
Tomographic subvolume average of eff-1 fusogen on extracellular vesicles
Analyse Tomographic subvolume average of eff-1 fusogen on extracellular vesicles in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4CYL
- Type
- protein
- Length
- 461 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Eff-1A
- UniProt
- G5ECA1
- Pockets
- 3 · best druggability 0.53
Structure
electron microscopy · 1 distinct chain · 3% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Eff-1A | protein | 461 | 3% helix, 46% strand | G5ECA1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 224 | 0.53 | 0.77 | 44 | empty |
| 2 | 103 | 0.45 | 0.79 | 17 | empty |
| 3 | 109 | 0.38 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 4CYL · Tomographic subvolume average of EFF-1 fusogen on extracellular vesicles · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G5ECA1
- Elsewhere: RCSB PDB 4CYL · PDBe 4CYL · UniProt G5ECA1
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