Research workbench
Apo structure of 2-hydroxybiphenyl 3-monooxygenase hbpa
Analyse Apo structure of 2-hydroxybiphenyl 3-monooxygenase hbpa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4CY6
- Type
- protein
- Length
- 2,223 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2-hydroxybiphenyl-3-monooxygenase
- EC
- 1.14.13.44
- UniProt
- O06647
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 4 distinct chains · 36% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2-hydroxybiphenyl-3-monooxygenase (EC 1.14.13.44) | protein | 561 | 36% helix, 25% strand | O06647 |
| B | 2-hydroxybiphenyl-3-monooxygenase (EC 1.14.13.44) | protein | 555 | 36% helix, 26% strand | O06647 |
| C | 2-hydroxybiphenyl-3-monooxygenase (EC 1.14.13.44) | protein | 554 | 37% helix, 24% strand | O06647 |
| D | 2-hydroxybiphenyl-3-monooxygenase (EC 1.14.13.44) | protein | 553 | 37% helix, 25% strand | O06647 |
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.82 | 0.97 | 21 | empty |
| 2 | 160 | 0.81 | 0.97 | 22 | empty |
| 3 | 974 | 0.80 | 0.81 | 81 | empty |
| 4 | 779 | 0.79 | 0.83 | 90 | empty |
| 5 | 703 | 0.79 | 0.83 | 83 | empty |
Interfaces
4 interfaces between chains.
- A–C · 1567 Ų buried · 30 hydrogen bonds · protein-protein
- B–D · 1522 Ų buried · 29 hydrogen bonds · protein-protein
- A–B · 1108 Ų buried · 15 hydrogen bonds · protein-protein
- C–D · 1073 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 4CY6 · apo structure of 2-hydroxybiphenyl 3-monooxygenase HbpA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O06647
- Elsewhere: RCSB PDB 4CY6 · PDBe 4CY6 · UniProt O06647
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