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Structure of apobacterioferritin Y58F variant

Analyse Structure of apobacterioferritin Y58F variant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4CVT
Type: protein
Length: 157 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacterioferritin
UniProt: P0ABD3
Ligands: ZN
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bacterioferritin	protein	157	78% helix, 0% strand	P0ABD3

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.51	0.82	23	empty

Compared structures

4CVT · Structure of Apobacterioferritin Y58F variant · the same entry in another collection · chain A against A, TM-score 1.00
P0ABD3 · AlphaFold monomer V2.0 prediction for bacterioferritin (P0ABD3) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ABD3
Elsewhere: RCSB PDB 4CVT · PDBe 4CVT · UniProt P0ABD3

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